3D structure

PDB id
6XGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
6XGF|1|D|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XGF_031 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.1013
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6XGF|1|D|U|1116
6XGF|1|D|A|1117
6XGF|1|D|U|1118
*
6XGF|1|D|A|1155
6XGF|1|D|G|1156
6XGF|1|D|A|1157
6XGF|1|D|C|1158
6XGF|1|D|U|1159
6XGF|1|D|G|1160
6XGF|1|D|C|1161
*
6XGF|1|D|G|1175
6XGF|1|D|A|1176
6XGF|1|D|G|1177
6XGF|1|D|G|1178
6XGF|1|D|A|1179
6XGF|1|D|A|1180
6XGF|1|D|G|1181
6XGF|1|D|G|1182
6XGF|1|D|U|1183
6XGF|1|D|G|1184

Current chains

Chain D
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S2
Chain M
30S ribosomal protein S7
Chain O
30S ribosomal protein S9
Chain P
30S ribosomal protein S10
Chain S
30S ribosomal protein S14

Coloring options:


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