J3_6XHV_024

3D structure

PDB id

6XHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHV_024 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.431

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XHV|1|1a|G|1002
6XHV|1|1a|G|1003
6XHV|1|1a|A|1004
6XHV|1|1a|A|1005
6XHV|1|1a|C|1006
*
6XHV|1|1a|G|1023
6XHV|1|1a|G|1024
6XHV|1|1a|U|1025
6XHV|1|1a|G|1026
6XHV|1|1a|C|1027
6XHV|1|1a|C|1028
*
6XHV|1|1a|G|1033
6XHV|1|1a|G|1034
6XHV|1|1a|A|1035
6XHV|1|1a|G|1036
6XHV|1|1a|C|1037
6XHV|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains