J3_6XHW_008
3D structure
- PDB id
- 6XHW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CAAG*CGCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 6XHW|1|1A|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XHW_008 not in the Motif Atlas
- Homologous match to J3_7RQB_008
- Geometric discrepancy: 0.0349
- The information below is about J3_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16623.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6XHW|1|1A|C|1306
6XHW|1|1A|A|1307
6XHW|1|1A|A|1308
6XHW|1|1A|G|1309
*
6XHW|1|1A|C|1605
6XHW|1|1A|G|1606
6XHW|1|1A|C|1607
6XHW|1|1A|A|1608
6XHW|1|1A|A|1609
6XHW|1|1A|A|1610
6XHW|1|1A|C|1611
*
6XHW|1|1A|G|1620
6XHW|1|1A|U|1621
6XHW|1|1A|G|1622
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
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