3D structure

PDB id
6XHW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
UAAAC*GGGUCGUG*CG
Length
15 nucleotides
Bulged bases
6XHW|1|2A|U|272|||A
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XHW_031 not in the Motif Atlas
Homologous match to J3_7RQB_003
Geometric discrepancy: 0.0641
The information below is about J3_7RQB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_97921.1
Basepair signature
cWW-F-F-tSH-tWH-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6XHW|1|2A|U|269
6XHW|1|2A|A|270
6XHW|1|2A|A|271
6XHW|1|2A|A|271|||A
6XHW|1|2A|C|271|||B
*
6XHW|1|2A|G|271|||V
6XHW|1|2A|G|271|||W
6XHW|1|2A|G|271|||X
6XHW|1|2A|U|271|||Y
6XHW|1|2A|C|271|||Z
6XHW|1|2A|G|272
6XHW|1|2A|U|272|||A
6XHW|1|2A|G|272|||B
*
6XHW|1|2A|C|366
6XHW|1|2A|G|370

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 21
50S ribosomal protein L28
Chain 2I
50S ribosomal protein L9

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3049 s