J3_6XHW_069

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

6XHW|1|2A|A|2388, 6XHW|1|2A|U|2390, 6XHW|1|2A|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHW_069 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.0677

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6XHW|1|2A|G|2282
6XHW|1|2A|C|2283
6XHW|1|2A|C|2284
*
6XHW|1|2A|G|2384
6XHW|1|2A|C|2385
6XHW|1|2A|C|2386
6XHW|1|2A|U|2387
6XHW|1|2A|A|2388
6XHW|1|2A|G|2389
6XHW|1|2A|U|2390
6XHW|1|2A|G|2391
6XHW|1|2A|A|2392
6XHW|1|2A|A|2393
6XHW|1|2A|C|2394
6XHW|1|2A|C|2395
*
6XHW|1|2A|G|2421
6XHW|1|2A|A|2422
6XHW|1|2A|U|2423
6XHW|1|2A|C|2424
6XHW|1|2A|A|2425
6XHW|1|2A|A|2426
6XHW|1|2A|C|2427

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 21

50S ribosomal protein L28

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2y

Transfer RNA; tRNA