J3_6XHX_008

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6XHX|1|1A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHX_008 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0379

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6XHX|1|1A|C|1306
6XHX|1|1A|A|1307
6XHX|1|1A|A|1308
6XHX|1|1A|G|1309
*
6XHX|1|1A|C|1605
6XHX|1|1A|G|1606
6XHX|1|1A|C|1607
6XHX|1|1A|A|1608
6XHX|1|1A|A|1609
6XHX|1|1A|A|1610
6XHX|1|1A|C|1611
*
6XHX|1|1A|G|1620
6XHX|1|1A|U|1621
6XHX|1|1A|G|1622

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34