J3_6XHX_040

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CG*CGGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XHX|1|2A|C|2789
6XHX|1|2A|G|2792
*
6XHX|1|2A|C|2804
6XHX|1|2A|G|2805
6XHX|1|2A|G|2807
6XHX|1|2A|U|2808
6XHX|1|2A|A|2809
6XHX|1|2A|A|2810
6XHX|1|2A|G|2811
*
6XHX|1|2A|C|2889
6XHX|1|2A|G|2891
6XHX|1|2A|A|2892
6XHX|1|2A|G|2893
6XHX|1|2A|G|2894

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22