J3_6XHX_048

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

6XHX|1|2a|A|975, 6XHX|1|2a|G|976, 6XHX|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHX_048 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0883

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6XHX|1|2a|U|955
6XHX|1|2a|U|956
6XHX|1|2a|U|957
6XHX|1|2a|A|958
6XHX|1|2a|A|959
6XHX|1|2a|U|960
6XHX|1|2a|U|961
6XHX|1|2a|C|962
*
6XHX|1|2a|G|973
6XHX|1|2a|A|974
6XHX|1|2a|A|975
6XHX|1|2a|G|976
6XHX|1|2a|A|977
6XHX|1|2a|A|978
6XHX|1|2a|C|979
6XHX|1|2a|C|980
6XHX|1|2a|U|981
6XHX|1|2a|U|982
6XHX|1|2a|A|983
6XHX|1|2a|C|984
*
6XHX|1|2a|G|1221
6XHX|1|2a|G|1222
6XHX|1|2a|C|1223
6XHX|1|2a|G|1224
6XHX|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2y

Ribosome-associated inhibitor A