3D structure

PDB id
6XHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
6XHX|1|1A|A|2388, 6XHX|1|1A|U|2390, 6XHX|1|1A|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XHX_060 not in the Motif Atlas
Homologous match to J3_9DFE_015
Geometric discrepancy: 0.0559
The information below is about J3_9DFE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6XHX|1|1A|G|2282
6XHX|1|1A|C|2283
6XHX|1|1A|C|2284
*
6XHX|1|1A|G|2384
6XHX|1|1A|C|2385
6XHX|1|1A|C|2386
6XHX|1|1A|U|2387
6XHX|1|1A|A|2388
6XHX|1|1A|G|2389
6XHX|1|1A|U|2390
6XHX|1|1A|G|2391
6XHX|1|1A|A|2392
6XHX|1|1A|A|2393
6XHX|1|1A|C|2394
6XHX|1|1A|C|2395
*
6XHX|1|1A|G|2421
6XHX|1|1A|A|2422
6XHX|1|1A|U|2423
6XHX|1|1A|C|2424
6XHX|1|1A|A|2425
6XHX|1|1A|A|2426
6XHX|1|1A|C|2427

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 10
50S ribosomal protein L27
Chain 11
50S ribosomal protein L28
Chain 16
50S ribosomal protein L33
Chain 18
50S ribosomal protein L35
Chain 1P
50S ribosomal protein L15
Chain 1Z
50S ribosomal protein L25

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2225 s