J3_6XHX_071

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UGGAAU*GGAACGCCGAUGG*CAG

Length

22 nucleotides

Bulged bases

6XHX|1|2a|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XHX|1|2a|U|672
6XHX|1|2a|G|673
6XHX|1|2a|G|674
6XHX|1|2a|A|675
6XHX|1|2a|A|676
6XHX|1|2a|U|677
*
6XHX|1|2a|G|713
6XHX|1|2a|G|714
6XHX|1|2a|A|715
6XHX|1|2a|A|716
6XHX|1|2a|C|717
6XHX|1|2a|G|718
6XHX|1|2a|C|719
6XHX|1|2a|C|720
6XHX|1|2a|G|721
6XHX|1|2a|A|722
6XHX|1|2a|U|723
6XHX|1|2a|G|724
6XHX|1|2a|G|725
*
6XHX|1|2a|C|732
6XHX|1|2a|A|733
6XHX|1|2a|G|734

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2f

30S ribosomal protein S6

Chain 2k

30S ribosomal protein S11

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18