J3_6XHX_072

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CCUUGACAU*ACAG*CUUACGG

Length

20 nucleotides

Bulged bases

6XHX|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XHX|1|2a|C|989
6XHX|1|2a|C|990
6XHX|1|2a|U|991
6XHX|1|2a|U|992
6XHX|1|2a|G|993
6XHX|1|2a|A|994
6XHX|1|2a|C|995
6XHX|1|2a|A|996
6XHX|1|2a|U|997
*
6XHX|1|2a|A|1044
6XHX|1|2a|C|1045
6XHX|1|2a|A|1046
6XHX|1|2a|G|1047
*
6XHX|1|2a|C|1210
6XHX|1|2a|U|1211
6XHX|1|2a|U|1212
6XHX|1|2a|A|1213
6XHX|1|2a|C|1214
6XHX|1|2a|G|1215
6XHX|1|2a|G|1216

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19