J3_6XHY_048

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

6XHY|1|2a|A|975, 6XHY|1|2a|G|976, 6XHY|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHY_048 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0636

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6XHY|1|2a|U|955
6XHY|1|2a|U|956
6XHY|1|2a|U|957
6XHY|1|2a|A|958
6XHY|1|2a|A|959
6XHY|1|2a|U|960
6XHY|1|2a|U|961
6XHY|1|2a|C|962
*
6XHY|1|2a|G|973
6XHY|1|2a|A|974
6XHY|1|2a|A|975
6XHY|1|2a|G|976
6XHY|1|2a|A|977
6XHY|1|2a|A|978
6XHY|1|2a|C|979
6XHY|1|2a|C|980
6XHY|1|2a|U|981
6XHY|1|2a|U|982
6XHY|1|2a|A|983
6XHY|1|2a|C|984
*
6XHY|1|2a|G|1221
6XHY|1|2a|G|1222
6XHY|1|2a|C|1223
6XHY|1|2a|G|1224
6XHY|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Transfer RNA; tRNA