J3_6XHY_059

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

6XHY|1|1A|A|2388, 6XHY|1|1A|U|2390, 6XHY|1|1A|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XHY_059 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.053

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.1

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6XHY|1|1A|G|2282
6XHY|1|1A|C|2283
6XHY|1|1A|C|2284
*
6XHY|1|1A|G|2384
6XHY|1|1A|C|2385
6XHY|1|1A|C|2386
6XHY|1|1A|U|2387
6XHY|1|1A|A|2388
6XHY|1|1A|G|2389
6XHY|1|1A|U|2390
6XHY|1|1A|G|2391
6XHY|1|1A|A|2392
6XHY|1|1A|A|2393
6XHY|1|1A|C|2394
6XHY|1|1A|C|2395
*
6XHY|1|1A|G|2421
6XHY|1|1A|A|2422
6XHY|1|1A|U|2423
6XHY|1|1A|C|2424
6XHY|1|1A|A|2425
6XHY|1|1A|A|2426
6XHY|1|1A|C|2427

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 11

50S ribosomal protein L28

Chain 16

50S ribosomal protein L33

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15

Chain 1y

Transfer RNA; tRNA