J3_6XIJ_005

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XIJ_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0664

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.2

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

6

Unit IDs

6XIJ|1|D|C|936
6XIJ|1|D|A|937
6XIJ|1|D|A|938
6XIJ|1|D|G|939
*
6XIJ|1|D|C|1344
6XIJ|1|D|U|1345
6XIJ|1|D|A|1346
6XIJ|1|D|G|1347
6XIJ|1|D|U|1348
6XIJ|1|D|A|1349
6XIJ|1|D|A|1350
*
6XIJ|1|D|U|1372
6XIJ|1|D|G|1373
6XIJ|1|D|A|1374
6XIJ|1|D|A|1375
6XIJ|1|D|U|1376
6XIJ|1|D|A|1377
6XIJ|1|D|C|1378
6XIJ|1|D|G|1379

Current chains

Chain D

16S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain M

30S ribosomal protein S7

Chain O

30S ribosomal protein S9