J3_6XIJ_030

3D structure

PDB id

6XIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6XIJ|1|D|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XIJ_030 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1237

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6XIJ|1|D|C|990
6XIJ|1|D|U|991
6XIJ|1|D|U|992
6XIJ|1|D|G|993
6XIJ|1|D|A|994
6XIJ|1|D|C|995
6XIJ|1|D|A|996
6XIJ|1|D|U|997
*
6XIJ|1|D|A|1044
6XIJ|1|D|C|1045
6XIJ|1|D|A|1046
6XIJ|1|D|G|1047
*
6XIJ|1|D|C|1210
6XIJ|1|D|U|1211
6XIJ|1|D|U|1212
6XIJ|1|D|A|1213
6XIJ|1|D|C|1214
6XIJ|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14