J3_6XQD_034

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6XQD|1|2A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XQD_034 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0703

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6XQD|1|2A|C|1306
6XQD|1|2A|A|1307
6XQD|1|2A|A|1308
6XQD|1|2A|G|1309
*
6XQD|1|2A|C|1605
6XQD|1|2A|G|1606
6XQD|1|2A|C|1607
6XQD|1|2A|A|1608
6XQD|1|2A|A|1609
6XQD|1|2A|A|1610
6XQD|1|2A|C|1611
*
6XQD|1|2A|G|1620
6XQD|1|2A|U|1621
6XQD|1|2A|G|1622

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34