J3_6XQD_042

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAUCUUC*GAGC

Length

15 nucleotides

Bulged bases

6XQD|1|2a|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQD|1|2a|G|46
6XQD|1|2a|C|47
*
6XQD|1|2a|G|361
6XQD|1|2a|G|362
6XQD|1|2a|A|363
6XQD|1|2a|A|364
6XQD|1|2a|U|365
6XQD|1|2a|C|366
6XQD|1|2a|U|367
6XQD|1|2a|U|368
6XQD|1|2a|C|369
*
6XQD|1|2a|G|392
6XQD|1|2a|A|393
6XQD|1|2a|G|394
6XQD|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16