J3_6XQD_050

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQD|1|2a|G|1002
6XQD|1|2a|G|1003
6XQD|1|2a|A|1004
6XQD|1|2a|A|1005
6XQD|1|2a|C|1006
*
6XQD|1|2a|G|1023
6XQD|1|2a|G|1024
6XQD|1|2a|U|1025
6XQD|1|2a|G|1026
6XQD|1|2a|C|1027
6XQD|1|2a|C|1028
*
6XQD|1|2a|G|1033
6XQD|1|2a|G|1034
6XQD|1|2a|A|1035
6XQD|1|2a|G|1036
6XQD|1|2a|C|1037
6XQD|1|2a|C|1038

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains