J3_6XQD_070

3D structure

PDB id

6XQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6XQD|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XQD_070 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1726

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6XQD|1|2a|C|990
6XQD|1|2a|U|991
6XQD|1|2a|U|992
6XQD|1|2a|G|993
6XQD|1|2a|A|994
6XQD|1|2a|C|995
6XQD|1|2a|A|996
6XQD|1|2a|U|997
*
6XQD|1|2a|A|1044
6XQD|1|2a|C|1045
6XQD|1|2a|A|1046
6XQD|1|2a|G|1047
*
6XQD|1|2a|C|1210
6XQD|1|2a|U|1211
6XQD|1|2a|U|1212
6XQD|1|2a|A|1213
6XQD|1|2a|C|1214
6XQD|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z