J3_6XQE_024

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XQE_024 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.487

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQE|1|1a|G|1002
6XQE|1|1a|G|1003
6XQE|1|1a|A|1004
6XQE|1|1a|A|1005
6XQE|1|1a|C|1006
*
6XQE|1|1a|G|1023
6XQE|1|1a|G|1024
6XQE|1|1a|U|1025
6XQE|1|1a|G|1026
6XQE|1|1a|C|1027
6XQE|1|1a|C|1028
*
6XQE|1|1a|G|1033
6XQE|1|1a|G|1034
6XQE|1|1a|A|1035
6XQE|1|1a|G|1036
6XQE|1|1a|C|1037
6XQE|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains