J3_6XQE_040

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGG*CCGGUAAG*CGAGG

Length

17 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQE|1|2A|C|2788
6XQE|1|2A|C|2789
6XQE|1|2A|G|2792
6XQE|1|2A|G|2793
*
6XQE|1|2A|C|2803
6XQE|1|2A|C|2804
6XQE|1|2A|G|2805
6XQE|1|2A|G|2807
6XQE|1|2A|U|2808
6XQE|1|2A|A|2809
6XQE|1|2A|A|2810
6XQE|1|2A|G|2811
*
6XQE|1|2A|C|2889
6XQE|1|2A|G|2891
6XQE|1|2A|A|2892
6XQE|1|2A|G|2893
6XQE|1|2A|G|2894

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3