3D structure

PDB id
6XQE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
6XQE|1|2a|A|975, 6XQE|1|2a|G|976, 6XQE|1|2a|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XQE_048 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0975
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6XQE|1|2a|U|955
6XQE|1|2a|U|956
6XQE|1|2a|U|957
6XQE|1|2a|A|958
6XQE|1|2a|A|959
6XQE|1|2a|U|960
6XQE|1|2a|U|961
6XQE|1|2a|C|962
*
6XQE|1|2a|G|973
6XQE|1|2a|A|974
6XQE|1|2a|A|975
6XQE|1|2a|G|976
6XQE|1|2a|A|977
6XQE|1|2a|A|978
6XQE|1|2a|C|979
6XQE|1|2a|C|980
6XQE|1|2a|U|981
6XQE|1|2a|U|982
6XQE|1|2a|A|983
6XQE|1|2a|C|984
*
6XQE|1|2a|G|1221
6XQE|1|2a|G|1222
6XQE|1|2a|C|1223
6XQE|1|2a|G|1224
6XQE|1|2a|A|1225

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2j
30S ribosomal protein S10
Chain 2m
30S ribosomal protein S13
Chain 2n
30S ribosomal protein S14 type Z
Chain 2s
30S ribosomal protein S19

Coloring options:


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