J3_6XQE_073

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGAAU*GGAACGCCGAUGG*CAG

Length

22 nucleotides

Bulged bases

6XQE|1|2a|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XQE|1|2a|U|672
6XQE|1|2a|G|673
6XQE|1|2a|G|674
6XQE|1|2a|A|675
6XQE|1|2a|A|676
6XQE|1|2a|U|677
*
6XQE|1|2a|G|713
6XQE|1|2a|G|714
6XQE|1|2a|A|715
6XQE|1|2a|A|716
6XQE|1|2a|C|717
6XQE|1|2a|G|718
6XQE|1|2a|C|719
6XQE|1|2a|C|720
6XQE|1|2a|G|721
6XQE|1|2a|A|722
6XQE|1|2a|U|723
6XQE|1|2a|G|724
6XQE|1|2a|G|725
*
6XQE|1|2a|C|732
6XQE|1|2a|A|733
6XQE|1|2a|G|734

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2f

30S ribosomal protein S6

Chain 2k

30S ribosomal protein S11

Chain 2o

30S ribosomal protein S15

Chain 2r

30S ribosomal protein S18