J3_6XYW_002
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- AC*GAAAGGC*GAUCU
- Length
- 14 nucleotides
- Bulged bases
- 6XYW|1|1|A|70, 6XYW|1|1|A|71, 6XYW|1|1|A|72, 6XYW|1|1|G|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XYW_002 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.2212
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6XYW|1|1|A|55
6XYW|1|1|C|56
*
6XYW|1|1|G|69
6XYW|1|1|A|70
6XYW|1|1|A|71
6XYW|1|1|A|72
6XYW|1|1|G|73
6XYW|1|1|G|74
6XYW|1|1|C|75
*
6XYW|1|1|G|104
6XYW|1|1|A|105
6XYW|1|1|U|106
6XYW|1|1|C|107
6XYW|1|1|U|108
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AG
- At5g40080
- Chain At
- At4g39880
- Chain Ay
- At1g07830/F24B9_7
Coloring options: