J3_6XYW_015
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CGG*CUUG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6XYW_015 not in the Motif Atlas
- Geometric match to J3_1KUQ_001
- Geometric discrepancy: 0.2563
- The information below is about J3_1KUQ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6XYW|1|2|C|583
6XYW|1|2|G|584
6XYW|1|2|G|585
*
6XYW|1|2|C|646
6XYW|1|2|U|647
6XYW|1|2|U|648
6XYW|1|2|G|649
*
6XYW|1|2|C|749
6XYW|1|2|G|750
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain Bg
- 40S ribosomal protein S15a-5
- Chain Bk
- Ribosomal protein S12, mitochondrial
- Chain Bn
- At1g15810/F7H2_23
- Chain Bp
- Nucleic acid-binding, OB-fold-like protein
- Chain Bv
- AT5g49210/K21P3_8
Coloring options: