J3_6XYW_019

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XYW_019 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.2651

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6XYW|1|2|U|936
6XYW|1|2|G|937
6XYW|1|2|G|938
6XYW|1|2|A|939
*
6XYW|1|2|U|1585
6XYW|1|2|A|1586
6XYW|1|2|C|1587
*
6XYW|1|2|G|1686
6XYW|1|2|G|1687
6XYW|1|2|A|1688
6XYW|1|2|A|1689

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bh

30S ribosomal protein S9, mitochondrial

Chain Bt

30S ribosomal protein S31, mitochondrial