J3_6XYW_037

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGG*CUUGAG*CCGACG

Length

15 nucleotides

Bulged bases

6XYW|1|2|U|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XYW|1|2|C|583
6XYW|1|2|G|584
6XYW|1|2|G|585
*
6XYW|1|2|C|646
6XYW|1|2|U|647
6XYW|1|2|U|648
6XYW|1|2|G|649
6XYW|1|2|A|650
6XYW|1|2|G|651
*
6XYW|1|2|C|745
6XYW|1|2|C|746
6XYW|1|2|G|747
6XYW|1|2|A|748
6XYW|1|2|C|749
6XYW|1|2|G|750

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bg

40S ribosomal protein S15a-5

Chain Bk

Ribosomal protein S12, mitochondrial

Chain Bn

At1g15810/F7H2_23

Chain Bp

Nucleic acid-binding, OB-fold-like protein

Chain Bv

AT5g49210/K21P3_8