3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
6XZ7|1|A|C|1607, 6XZ7|1|A|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XZ7_007 not in the Motif Atlas
Homologous match to J3_7RQB_008
Geometric discrepancy: 0.2488
The information below is about J3_7RQB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16623.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6XZ7|1|A|C|1306
6XZ7|1|A|A|1307
6XZ7|1|A|A|1308
6XZ7|1|A|G|1309
*
6XZ7|1|A|C|1605
6XZ7|1|A|C|1606
6XZ7|1|A|C|1607
6XZ7|1|A|A|1608
6XZ7|1|A|A|1609
6XZ7|1|A|A|1610
6XZ7|1|A|C|1611
*
6XZ7|1|A|G|1620
6XZ7|1|A|U|1621
6XZ7|1|A|G|1622

Current chains

Chain A
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L34

Coloring options:


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