3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CGG*CUUG*CG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XZB_002 not in the Motif Atlas
Homologous match to J3_5J7L_002
Geometric discrepancy: 0.075
The information below is about J3_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.5
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6XZB|1|A1|C|586
6XZB|1|A1|G|587
6XZB|1|A1|G|588
*
6XZB|1|A1|C|651
6XZB|1|A1|U|652
6XZB|1|A1|U|653
6XZB|1|A1|G|654
*
6XZB|1|A1|C|754
6XZB|1|A1|G|755

Current chains

Chain A1
16S rRNA

Nearby chains

Chain H1
30S ribosomal protein S8
Chain L1
30S ribosomal protein S12
Chain O1
30S ribosomal protein S15
Chain Q1
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1092 s