J3_6XZB_015

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6XZB|1|A2|U|686, 6XZB|1|A2|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZB_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0479

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6XZB|1|A2|U|683
6XZB|1|A2|G|684
6XZB|1|A2|A|685
6XZB|1|A2|U|686
6XZB|1|A2|C|687
6XZB|1|A2|U|688
6XZB|1|A2|A|689
*
6XZB|1|A2|U|773
6XZB|1|A2|G|774
6XZB|1|A2|G|775
*
6XZB|1|A2|C|791
6XZB|1|A2|A|792
6XZB|1|A2|A|793
6XZB|1|A2|A|794

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain c2

50S ribosomal protein L34