J3_6XZB_016

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZB_016 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0466

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6XZB|1|A2|C|698
6XZB|1|A2|A|699
6XZB|1|A2|G|700
*
6XZB|1|A2|C|732
6XZB|1|A2|G|733
6XZB|1|A2|A|734
6XZB|1|A2|A|735
6XZB|1|A2|C|736
*
6XZB|1|A2|G|760
6XZB|1|A2|A|761
6XZB|1|A2|U|762
6XZB|1|A2|G|763

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2