J3_6XZB_019

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6XZB|1|A2|C|1607, 6XZB|1|A2|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZB_019 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.2488

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6XZB|1|A2|C|1306
6XZB|1|A2|A|1307
6XZB|1|A2|A|1308
6XZB|1|A2|G|1309
*
6XZB|1|A2|C|1605
6XZB|1|A2|C|1606
6XZB|1|A2|C|1607
6XZB|1|A2|A|1608
6XZB|1|A2|A|1609
6XZB|1|A2|A|1610
6XZB|1|A2|C|1611
*
6XZB|1|A2|G|1620
6XZB|1|A2|U|1621
6XZB|1|A2|G|1622

Current chains

Chain A2

23S rRNA

Nearby chains

Chain c2

50S ribosomal protein L34