J3_6XZB_020

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6XZB_020 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.0747

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6XZB|1|A2|U|1344
6XZB|1|A2|C|1345
6XZB|1|A2|G|1346
6XZB|1|A2|A|1347
6XZB|1|A2|C|1348
6XZB|1|A2|C|1349
*
6XZB|1|A2|G|1382
6XZB|1|A2|A|1383
6XZB|1|A2|A|1384
6XZB|1|A2|A|1385
*
6XZB|1|A2|U|1402
6XZB|1|A2|A|1403

Current chains

Chain A2

23S rRNA

Nearby chains

Chain T2

50S ribosomal protein L23