3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
6XZB|1|A2|A|2388, 6XZB|1|A2|U|2390, 6XZB|1|A2|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XZB_035 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0557
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6XZB|1|A2|G|2282
6XZB|1|A2|C|2283
6XZB|1|A2|A|2284
*
6XZB|1|A2|U|2384
6XZB|1|A2|C|2385
6XZB|1|A2|A|2386
6XZB|1|A2|U|2387
6XZB|1|A2|A|2388
6XZB|1|A2|G|2389
6XZB|1|A2|U|2390
6XZB|1|A2|G|2391
6XZB|1|A2|A|2392
6XZB|1|A2|U|2393
6XZB|1|A2|C|2394
6XZB|1|A2|C|2395
*
6XZB|1|A2|G|2421
6XZB|1|A2|C|2422
6XZB|1|A2|U|2423
6XZB|1|A2|C|2424
6XZB|1|A2|A|2425
6XZB|1|A2|A|2426
6XZB|1|A2|C|2427

Current chains

Chain A2
23S rRNA

Nearby chains

Chain L2
50S ribosomal protein L15
Chain W2
50S ribosomal protein L27
Chain b2
50S ribosomal protein L33
Chain d2
50S ribosomal protein L35

Coloring options:


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