3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
6XZB|1|A2|U|2334, 6XZB|1|A2|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6XZB_036 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.0975
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

6XZB|1|A2|C|2295
6XZB|1|A2|U|2296
6XZB|1|A2|A|2297
6XZB|1|A2|A|2298
6XZB|1|A2|U|2299
*
6XZB|1|A2|A|2317
6XZB|1|A2|G|2318
6XZB|1|A2|G|2319
6XZB|1|A2|U|2320
6XZB|1|A2|U|2321
6XZB|1|A2|A|2322
6XZB|1|A2|G|2323
*
6XZB|1|A2|C|2332
6XZB|1|A2|A|2333
6XZB|1|A2|U|2334
6XZB|1|A2|A|2335
6XZB|1|A2|A|2336
6XZB|1|A2|G|2337

Current chains

Chain A2
23S rRNA

Nearby chains

Chain B2
5S ribosomal RNA; 5S rRNA
Chain F2
50S ribosomal protein L5
Chain O2
50S ribosomal protein L18
Chain W2
50S ribosomal protein L27
Chain f2
Transfer RNA; tRNA

Coloring options:


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