J3_6Y0G_020
3D structure
- PDB id
- 6Y0G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome in classical-PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUCUUGGGAGGCCUCUCGGCGCCCGAAGCAUU*AUGGAAUAGG*CAUGAU
- Length
- 48 nucleotides
- Bulged bases
- 6Y0G|1|S2|G|744, 6Y0G|1|S2|U|747, 6Y0G|1|S2|G|751, 6Y0G|1|S2|C|753, 6Y0G|1|S2|C|791, 6Y0G|1|S2|U|871, 6Y0G|1|S2|G|873, 6Y0G|1|S2|A|913
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Y0G|1|S2|A|685
6Y0G|1|S2|U|686
6Y0G|1|S2|C|687
6Y0G|1|S2|U|688
6Y0G|1|S2|U|689
6Y0G|1|S2|G|690
6Y0G|1|S2|G|691
6Y0G|1|S2|G|692
6Y0G|1|S2|A|693
6Y0G|1|S2|G|694
6Y0G|1|S2|G|744
6Y0G|1|S2|C|745
6Y0G|1|S2|C|746
6Y0G|1|S2|U|747
6Y0G|1|S2|C|748
6Y0G|1|S2|U|749
6Y0G|1|S2|C|750
6Y0G|1|S2|G|751
6Y0G|1|S2|G|752
6Y0G|1|S2|C|753
6Y0G|1|S2|G|789
6Y0G|1|S2|C|790
6Y0G|1|S2|C|791
6Y0G|1|S2|C|792
6Y0G|1|S2|G|793
6Y0G|1|S2|A|794
6Y0G|1|S2|A|795
6Y0G|1|S2|G|796
6Y0G|1|S2|C|797
6Y0G|1|S2|A|798
6Y0G|1|S2|U|799
6Y0G|1|S2|U|800
*
6Y0G|1|S2|A|865
6Y0G|1|S2|U|866
6Y0G|1|S2|G|867
6Y0G|1|S2|G|868
6Y0G|1|S2|A|869
6Y0G|1|S2|A|870
6Y0G|1|S2|U|871
6Y0G|1|S2|A|872
6Y0G|1|S2|G|873
6Y0G|1|S2|G|874
*
6Y0G|1|S2|C|912
6Y0G|1|S2|A|913
6Y0G|1|S2|U|914
6Y0G|1|S2|G|915
6Y0G|1|S2|A|916
6Y0G|1|S2|U|917
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
Coloring options: