Loop J3_6Y0G

3D structure

PDB id: 6Y0G (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of human ribosome in classical-PRE state
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Loop

Sequence: CACUGACU*AUUCGUGAUGGGGAUCGGGG*CCCCAUGAACGAG
Length: 41 nucleotides
Bulged bases: 6Y0G|1|S2|U|1535
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6Y0G|1|S2|C|1532
6Y0G|1|S2|A|1533
6Y0G|1|S2|C|1534
6Y0G|1|S2|U|1535
6Y0G|1|S2|G|1536
6Y0G|1|S2|A|1537
6Y0G|1|S2|C|1538
6Y0G|1|S2|U|1539
*
6Y0G|1|S2|A|1594
6Y0G|1|S2|U|1595
6Y0G|1|S2|U|1596
6Y0G|1|S2|C|1597
6Y0G|1|S2|G|1598
6Y0G|1|S2|U|1599
6Y0G|1|S2|G|1600
6Y0G|1|S2|A|1601
6Y0G|1|S2|U|1602
6Y0G|1|S2|G|1603
6Y0G|1|S2|G|1604
6Y0G|1|S2|G|1605
6Y0G|1|S2|G|1606
6Y0G|1|S2|A|1607
6Y0G|1|S2|U|1608
6Y0G|1|S2|C|1609
6Y0G|1|S2|G|1610
6Y0G|1|S2|G|1611
6Y0G|1|S2|G|1612
6Y0G|1|S2|G|1613
*
6Y0G|1|S2|C|1626
6Y0G|1|S2|C|1627
6Y0G|1|S2|C|1628
6Y0G|1|S2|C|1629
6Y0G|1|S2|A|1630
6Y0G|1|S2|U|1631
6Y0G|1|S2|G|1632
6Y0G|1|S2|A|1633
6Y0G|1|S2|A|1634
6Y0G|1|S2|C|1635
6Y0G|1|S2|G|1636
6Y0G|1|S2|A|1637
6Y0G|1|S2|G|1638

Current chains

Chain S2: 18S ribosomal RNA

Nearby chains

Chain SF: 40S ribosomal protein S5
Chain SP: 40S ribosomal protein S15
Chain SQ: 40S ribosomal protein S16
Chain SS: 40S ribosomal protein S18
Chain ST: 40S ribosomal protein S19
Chain SZ: 40S ribosomal protein S25

J3_6Y0G_040