J3_6Y57_004

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGAACUA*UAG*CGAAC

Length

16 nucleotides

Bulged bases

6Y57|1|L5|A|1534, 6Y57|1|L5|G|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y57|1|L5|G|1530
6Y57|1|L5|U|1531
6Y57|1|L5|G|1532
6Y57|1|L5|A|1533
6Y57|1|L5|A|1534
6Y57|1|L5|C|1535
6Y57|1|L5|U|1536
6Y57|1|L5|A|1537
*
6Y57|1|L5|U|1622
6Y57|1|L5|A|1623
6Y57|1|L5|G|1624
*
6Y57|1|L5|C|1640
6Y57|1|L5|G|1641
6Y57|1|L5|A|1642
6Y57|1|L5|A|1643
6Y57|1|L5|C|1644

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LC

60S ribosomal protein L4

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39