J3_6Y69_029

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6Y69|1|A|U|321, 6Y69|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Y69_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1356

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6Y69|1|A|G|297
6Y69|1|A|G|298
6Y69|1|A|A|299
6Y69|1|A|A|300
6Y69|1|A|G|301
*
6Y69|1|A|C|316
6Y69|1|A|G|317
6Y69|1|A|C|318
6Y69|1|A|G|319
6Y69|1|A|A|320
6Y69|1|A|U|321
6Y69|1|A|A|322
6Y69|1|A|C|323
6Y69|1|A|A|324
6Y69|1|A|G|325
*
6Y69|1|A|C|337
6Y69|1|A|G|338
6Y69|1|A|U|339
6Y69|1|A|A|340
6Y69|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24