J3_6Y69_036
3D structure
- PDB id
- 6Y69 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 6Y69|1|a|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Y69_036 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1148
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6Y69|1|a|U|1116
6Y69|1|a|A|1117
6Y69|1|a|U|1118
*
6Y69|1|a|A|1155
6Y69|1|a|G|1156
6Y69|1|a|A|1157
6Y69|1|a|C|1158
6Y69|1|a|U|1159
6Y69|1|a|G|1160
6Y69|1|a|C|1161
*
6Y69|1|a|G|1175
6Y69|1|a|A|1176
6Y69|1|a|G|1177
6Y69|1|a|G|1178
6Y69|1|a|A|1179
6Y69|1|a|A|1180
6Y69|1|a|G|1181
6Y69|1|a|G|1182
6Y69|1|a|U|1183
6Y69|1|a|G|1184
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
Coloring options: