J3_6Y6X_001

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6Y6X|1|L5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y6X|1|L5|C|112
6Y6X|1|L5|A|113
6Y6X|1|L5|G|114
6Y6X|1|L5|C|115
6Y6X|1|L5|G|116
*
6Y6X|1|L5|C|155
6Y6X|1|L5|G|156
6Y6X|1|L5|U|157
6Y6X|1|L5|A|158
6Y6X|1|L5|C|159
6Y6X|1|L5|G|160
*
6Y6X|1|L5|C|275
6Y6X|1|L5|C|276
6Y6X|1|L5|G|277
6Y6X|1|L5|G|278

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36