J3_6Y6X_009

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6Y6X|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y6X|1|L5|A|2551
6Y6X|1|L5|G|2552
6Y6X|1|L5|A|2553
6Y6X|1|L5|U|2554
6Y6X|1|L5|G|2555
*
6Y6X|1|L5|C|2572
6Y6X|1|L5|A|2573
6Y6X|1|L5|G|2574
6Y6X|1|L5|U|2575
*
6Y6X|1|L5|A|2757
6Y6X|1|L5|G|2758
6Y6X|1|L5|G|2759
6Y6X|1|L5|G|2760
6Y6X|1|L5|U|2761
6Y6X|1|L5|G|2762
6Y6X|1|L5|U|2763
6Y6X|1|L5|A|2764
6Y6X|1|L5|A|2765
6Y6X|1|L5|A|2766
6Y6X|1|L5|U|2767

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27