J3_6YAL_005

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6YAL|1|2|C|1134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAL|1|2|C|1090
6YAL|1|2|U|1091
6YAL|1|2|G|1092
*
6YAL|1|2|U|1132
6YAL|1|2|U|1133
6YAL|1|2|C|1134
6YAL|1|2|C|1135
6YAL|1|2|G|1136
*
6YAL|1|2|C|1143
6YAL|1|2|A|1144
6YAL|1|2|A|1145
6YAL|1|2|A|1146
6YAL|1|2|G|1147

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein uS2

Chain X

40S ribosomal protein eS21

Chain Y

40S ribosomal protein uS8

Chain b

40S ribosomal protein eS26

Chain c

40S ribosomal protein eS27