J3_6YAL_008
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 6YAL|1|2|G|1252, 6YAL|1|2|A|1254
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YAL_008 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1287
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YAL|1|2|C|1233
6YAL|1|2|U|1234
6YAL|1|2|U|1235
6YAL|1|2|A|1236
6YAL|1|2|A|1237
6YAL|1|2|U|1238
6YAL|1|2|U|1239
6YAL|1|2|U|1240
*
6YAL|1|2|G|1251
6YAL|1|2|G|1252
6YAL|1|2|G|1253
6YAL|1|2|A|1254
6YAL|1|2|A|1255
6YAL|1|2|A|1256
6YAL|1|2|C|1257
6YAL|1|2|C|1258
6YAL|1|2|U|1259
6YAL|1|2|C|1260
6YAL|1|2|A|1261
6YAL|1|2|C|1262
*
6YAL|1|2|G|1511
6YAL|1|2|G|1512
6YAL|1|2|C|1513
6YAL|1|2|U|1514
6YAL|1|2|G|1515
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain R
- 40S ribosomal protein uS19
- Chain U
- 40S ribosomal protein uS13
- Chain W
- 40S ribosomal protein uS10
- Chain e
- 40S ribosomal protein uS14
- Chain f
- 40S ribosomal protein eS31
- Chain j
- eukaryotic translation initiation factor 1A
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