3D structure

PDB id
6YAL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage initiation complex with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUUAAUUU*GGGAAACCUCAC*GGCUG
Length
25 nucleotides
Bulged bases
6YAL|1|2|G|1252, 6YAL|1|2|A|1254
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YAL_008 not in the Motif Atlas
Homologous match to J3_8C3A_040
Geometric discrepancy: 0.1287
The information below is about J3_8C3A_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.3
Basepair signature
cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

6YAL|1|2|C|1233
6YAL|1|2|U|1234
6YAL|1|2|U|1235
6YAL|1|2|A|1236
6YAL|1|2|A|1237
6YAL|1|2|U|1238
6YAL|1|2|U|1239
6YAL|1|2|U|1240
*
6YAL|1|2|G|1251
6YAL|1|2|G|1252
6YAL|1|2|G|1253
6YAL|1|2|A|1254
6YAL|1|2|A|1255
6YAL|1|2|A|1256
6YAL|1|2|C|1257
6YAL|1|2|C|1258
6YAL|1|2|U|1259
6YAL|1|2|C|1260
6YAL|1|2|A|1261
6YAL|1|2|C|1262
*
6YAL|1|2|G|1511
6YAL|1|2|G|1512
6YAL|1|2|C|1513
6YAL|1|2|U|1514
6YAL|1|2|G|1515

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain R
40S ribosomal protein uS19
Chain U
40S ribosomal protein uS13
Chain W
40S ribosomal protein uS10
Chain e
40S ribosomal protein uS14
Chain f
40S ribosomal protein eS31
Chain j
eukaryotic translation initiation factor 1A

Coloring options:


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