J3_6YAL_015

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

6YAL|1|2|U|224, 6YAL|1|2|C|225, 6YAL|1|2|C|275, 6YAL|1|2|U|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAL|1|2|C|220
6YAL|1|2|A|221
6YAL|1|2|G|222
6YAL|1|2|A|223
6YAL|1|2|U|224
6YAL|1|2|C|225
6YAL|1|2|A|226
6YAL|1|2|A|227
6YAL|1|2|A|228
6YAL|1|2|A|229
6YAL|1|2|C|230
6YAL|1|2|C|231
6YAL|1|2|A|232
6YAL|1|2|A|233
6YAL|1|2|C|234
6YAL|1|2|C|235
*
6YAL|1|2|G|274
6YAL|1|2|C|275
6YAL|1|2|U|276
6YAL|1|2|U|277
6YAL|1|2|U|278
6YAL|1|2|G|279
*
6YAL|1|2|C|286
6YAL|1|2|U|287
6YAL|1|2|A|288
6YAL|1|2|G|289

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein eS4

Chain I

40S ribosomal protein eS6

Chain K

40S ribosomal protein eS8

Chain N

40S ribosomal protein uS17