J3_6YAM_015

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

6YAM|1|2|U|224, 6YAM|1|2|C|225, 6YAM|1|2|C|275, 6YAM|1|2|U|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAM|1|2|C|220
6YAM|1|2|A|221
6YAM|1|2|G|222
6YAM|1|2|A|223
6YAM|1|2|U|224
6YAM|1|2|C|225
6YAM|1|2|A|226
6YAM|1|2|A|227
6YAM|1|2|A|228
6YAM|1|2|A|229
6YAM|1|2|C|230
6YAM|1|2|C|231
6YAM|1|2|A|232
6YAM|1|2|A|233
6YAM|1|2|C|234
6YAM|1|2|C|235
*
6YAM|1|2|G|274
6YAM|1|2|C|275
6YAM|1|2|U|276
6YAM|1|2|U|277
6YAM|1|2|U|278
6YAM|1|2|G|279
*
6YAM|1|2|C|286
6YAM|1|2|U|287
6YAM|1|2|A|288
6YAM|1|2|G|289

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein eS4

Chain I

40S ribosomal protein eS6

Chain K

40S ribosomal protein eS8

Chain N

40S ribosomal protein uS17