3D structure

PDB id
6YAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CUGGC*GGACAAG*CCCGAGAUUG
Length
22 nucleotides
Bulged bases
6YAM|1|2|U|1473
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YAM|1|2|C|1387
6YAM|1|2|U|1388
6YAM|1|2|G|1389
6YAM|1|2|G|1390
6YAM|1|2|C|1391
*
6YAM|1|2|G|1446
6YAM|1|2|G|1447
6YAM|1|2|A|1448
6YAM|1|2|C|1449
6YAM|1|2|A|1450
6YAM|1|2|A|1451
6YAM|1|2|G|1452
*
6YAM|1|2|C|1466
6YAM|1|2|C|1467
6YAM|1|2|C|1468
6YAM|1|2|G|1469
6YAM|1|2|A|1470
6YAM|1|2|G|1471
6YAM|1|2|A|1472
6YAM|1|2|U|1473
6YAM|1|2|U|1474
6YAM|1|2|G|1475

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain F
40S ribosomal protein uS3
Chain H
40S ribosomal protein uS7
Chain S
40S ribosomal protein uS9
Chain T
40S ribosomal protein eS17
Chain W
40S ribosomal protein uS10
Chain e
ribosomal protein uS14
Chain g
ribosomal protein RACK1
Chain m
eukaryotic translation initiation factor 3 subunit d

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