J3_6YAM_019
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 6YAM|1|2|G|917
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YAM_019 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1806
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6YAM|1|2|U|672
6YAM|1|2|G|673
6YAM|1|2|G|674
*
6YAM|1|2|U|914
6YAM|1|2|A|915
6YAM|1|2|A|916
6YAM|1|2|G|917
6YAM|1|2|A|918
6YAM|1|2|G|919
*
6YAM|1|2|C|1015
6YAM|1|2|A|1016
6YAM|1|2|U|1017
6YAM|1|2|U|1018
6YAM|1|2|A|1019
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain J
- ribosomal protein eS7
- Chain N
- 40S ribosomal protein uS17
- Chain P
- ribosomal protein uS15
- Chain Y
- 40S ribosomal protein uS8
- Chain Z
- 40S ribosomal protein uS12
- Chain c
- 40S ribosomal protein eS27
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