3D structure

PDB id
6YAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.48 Å

Loop

Sequence
AUUC*GGACCAGAG*CAUUU
Length
18 nucleotides
Bulged bases
6YAN|1|2|G|987
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YAN_003 not in the Motif Atlas
Homologous match to J3_4V88_033
Geometric discrepancy: 0.1261
The information below is about J3_4V88_033
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_38616.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

6YAN|1|2|A|934
6YAN|1|2|U|935
6YAN|1|2|U|936
6YAN|1|2|C|937
*
6YAN|1|2|G|981
6YAN|1|2|G|982
6YAN|1|2|A|983
6YAN|1|2|C|984
6YAN|1|2|C|985
6YAN|1|2|A|986
6YAN|1|2|G|987
6YAN|1|2|A|988
6YAN|1|2|G|989
*
6YAN|1|2|C|996
6YAN|1|2|A|997
6YAN|1|2|U|998
6YAN|1|2|U|999
6YAN|1|2|U|1000

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain D
ribosomal protein eS1
Chain P
ribosomal protein uS15
Chain Q
40S ribosomal protein uS11
Chain b
40S ribosomal protein eS26

Coloring options:


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