J3_6YAN_004

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6YAN|1|2|C|1134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YAN|1|2|C|1090
6YAN|1|2|U|1091
6YAN|1|2|G|1092
*
6YAN|1|2|U|1132
6YAN|1|2|U|1133
6YAN|1|2|C|1134
6YAN|1|2|C|1135
6YAN|1|2|G|1136
*
6YAN|1|2|C|1143
6YAN|1|2|A|1144
6YAN|1|2|A|1145
6YAN|1|2|A|1146
6YAN|1|2|G|1147

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein SA

Chain X

40S ribosomal protein S21

Chain Y

Ribosomal protein S15a

Chain b

40S ribosomal protein eS26

Chain c

40S ribosomal protein S27